Resources
Reagents
Arabidopsis seeds
Popular reporters and mutants can be obtained from the ABRC
If not available at the ABRC, please fill out this request form and send note to dbergmann@stanford.edu
Brachypodium seeds and Tomato seeds
Please fill out this request form and send note to dbergmann@stanford.edu
Plasmids for Proximity labeling (TurboID and miniTurboID) from Mair et al., 2019
Available from Addgene
Other plasmids not at ABRC or Addgene, please fill out this request form and send note to dbergmann@stanford.edu
DNA or RNA sequence Datasets
Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf (2021) Camila Lopez-Anido, lead author [link to PDF]
scRNA-seq
Series GSE167135
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE167135
Transcriptional profiling reveals signatures of latent developmental potential in Arabidopsis stomatal lineage ground cells (2021) Chin-Min Kimmy Ho, lead author [link to PDF]
RNA-seq
Series GSE129938
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129938
Cell-type--specific transcriptome and histone modification dynamics during cellular reprogramming in the Arabidopsis stomatal lineage (2019) Laura Lee, lead author [link to PDF]
ChiP-seq and RNA-seq
Superseries GSE118138
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118138
Direct Control of SPEECHLESS by PIF4 in the High-Temperature Response of Stomatal Development (2018) On Sun Lau, lead author [link to PDF]
RNA-seq
Series GSE110302
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110302
Transcriptome dynamics of the stomatal lineage: birth, amplification, and termination of a self-renewing population (2015) Jessika Adrian, lead author [link to PDF]
RNA-seq and ATH1 microarray
Superseries GSE58857
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58857
Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells (2014) On Sun Lau, lead author [link to PDF]
RNA-seq
ChIP-seq
Superseries GSE57954
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57954
Proteomics
Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID (2019) Andrea Mair, lead author [link to PDF]
Proximity labeling dataset for the 'FAMA interactome' experiment.
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015161
Proximity labeling dataset for the 'nuclear proteome' experiment.
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015162
FAMA-CFP AP-MS datasets
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015212
Expanded roles and divergent regulation of FAMA in Brachypodium and Arabidopsis stomatal development (2023) Katelyn McKown, lead author [link to PDF]
Co-Immunoprecipitation of transcriptional regulators of stomatal development in B. distachyon
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035582
Images and timelapse movies
A cell size threshold triggers commitment to stomatal fate in Arabidopsis (2023) Yang Gong, Renee Dale, Hannah Fung, Gabriel Amador, co-lead authors [link to PDF]
https://doi.org/10.6084/m9.figshare.21937301.v1
Software
A cell size threshold triggers commitment to stomatal fate in Arabidopsis (2023) Yang Gong, Renee Dale, Hannah Fung, Gabriel Amador, co-lead authors [link to PDF]
https://figshare.com/articles/software/Meristemoid_decision_tree_model/21958763
Quantitative and dynamic cell polarity tracking in plant cells (2021) Yan Gong, lead author [link to PDF]
User guide and POME macro found in supplemental data